ALADYN dynamics-based alignment of proteins
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PiSQRD Server
Select Parameters
Please provide entries via file upload or PDB id. The latter can be optionally followed by the chain identifier, e.g.
3hvgA
selects chain
A
of PDB entry
3hvg
.
Sample input:
to align the HIV-1 protease and human beta-secretase enter
1aid
and
3hvgA
in the two PDB code fields.
First PDB Structure
PDB Code:
or PDB file:
Second PDB Structure
PDB Code:
or PDB file:
Reference:
full text article
ALADYN: a web server for aligning proteins by matching their large-scale motion
R. Potestio; T. Aleksiev; F. Pontiggia; S. Cozzini; C. Micheletti
Nucleic Acids Research 2010; doi: 10.1093/nar/gkq293
